Tuesday, October 8, 2013

Ketahanan Pangan : sebuah ketidak pastian

Uncertainty on figures hampering food security efforts

Market vendor, India (Image: Reuters) Rising populations are expected to place an increasing strain on the global food system

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More than 600 scientists gathered in the Netherlands for a global food security conference, described as the first of its kind.
Organisers said science could help end uncertainty surrounding efforts to meet the food needs of future generations.
They added that, until now, there were many policy debates on food security but there was no scientific forum for researchers to share knowledge.
The next food security conference will be held in the US in 2015.
"A really key message from the conference for us is that we have got lots of estimates about needs of population growth etc, but at the moment we are so uncertain of the exact numbers - the uncertainty is really very high," said conference co-chairman Ken Giller, professor of plant production systems at Wageningen University.
"We talk about the current population being seven billion, moving to 9.2 billion in 2050 and the estimate is that we need to increase production 70% or more.
"But there are many different ways of addressing that. If we don't know what the problem is then we can't get started in addressing them."
Appetite for change
Prof Giller said there was "unprecedented interest" among the scientific community when details of the conference was first announced.
"We did anticipate about 250-300 people , but we actually ended up with more than 900 abstracts being submitted," he told BBC News.
"The conference was basically sold out - we had 600 people and that was all we could accommodate."
He explained that the conference was designed to create a forum where representatives from the different branches of science could come together and discuss and debate the issues of global food security.
"We pulled together a science committee with the real aim to make the conference broad and to include all the main disciplines," he said.
"We had people on the science committee from economics, nutrition and we had people dealing with food waste, which is a very important topical issue."
Grain market, India (Image: Reuters) The combination of poor harvests and rising demand has increased price volatility in global grain markets
Prof Giller said that current estimates suggested that 30-40% of the food produced was wasted and not eaten.
Other themes that were discussed at the conference included:
  • Nutritional security,
  • Sustainable intensification of food production systems,
  • Novel ways of feeding nine billion,
  • Agricultural production as feedstock for renewables.
The organisers hope that the outcomes from the four-day event in Noordwijkerhout, South Holland, will help focus the scientific world's contribution to the UN global policy system.
One of the UN's eight Millennium Development Goals (MDGs) was to "eradicate extreme poverty and hunger" by 2015, which included the target of halving - between 1990 and 2015 - the proportion of people suffering from hunger.
Assessments suggest the target is "within reach". However, a 2013 report on the progress of the MDGs warned that one in eight people remained chronically undernourished.
UN Secretary General Ban Ki-moon has announced that he wants to build on the MDGs, replacing them with a suite of Sustainable Development Goals that will run from 2015-2030.
He said one of his priorities was to "adopt globally agreed goals for food and nutrition security, mobilise all key stakeholders to provide support to smallholder farmers and food processors and bolster the resilience of communities and nations experiencing periodic food crises".
Prof Giller said this presented a "wonderful opportunity for science to get directly engaged in policies and help advise governments".

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Monday, October 7, 2013

A genetic solution saved the French wine industry

A genetic solution saved the French wine industry

grapes
Grapes by Steve Savage.
The mid to late 1800s was a very difficult time for the European wine grape industry. New pests associated with native North American grape species made their way to the Old World via transport between the continents. I recently wrote about how a fungal disease called downy mildew nearly destroyed the industry until it was saved by the accidental discovery of an effective chemical fungicide.
In this post I’m going to talk about an insect pest that was introduced to Europe in the same era. It was a a root feeding relative of aphid called phylloxera.
Native American grapes are quite tolerant to phylloxera, but when it started attacking the roots of the European Vitis vinifera grapes, it began debilitating and finally killing the vines. The aphid may have arrived in the 1850s, but was first recognized in 1863. This was an extremely trumatic economic and social crisis. More than 1 million hectares of vines were killed and many more debilitated before a solution was finally found. In this case the ultimate solution was found via genetics.

The genetic-based technology solution

1888 drawing of what is now classified as Daktulosphaira vitifoliae Phylloxera
1888 drawing of what is now classified as Daktulosphaira vitifoliae from Wikimedia Commons.
The solution to phylloxera that was ultimately applied seems obvious in hindsight. Since the North American grape species had always tolerated this pest, why not use them as “rootstocks” and graft the revered European varieties on top of them?
Grafting of desired varieties onto the roots of less desirable, but either more hardy or already established versions of the same crop was not a new idea. That had been practiced for thousands of years for many tree and vine crops. The ancient Hebrew and Christian scriptures are full of literary images based on the concept of grafting. It was an ancient, practical solution – but what it amounted to was a rather dramatic “genetic modification” of the roots of millions acres of European grapes (and eventually grapes around the world).
This idea of grafting onto foreign, low quality grapes was hard to swallow for much of the French wine community of the day. Their questions included:
  • Will treasured, traditional varieties like Pinot Noir grafted on this inferior sort of grape still make a classic red Burgundy worthy of each specific appellation in that district?
  • Will this new reality mess with the quality that was traditionally achieved with complex blend of varieties in a region like Bordeaux?
  • Will this new pest eventually overcome this solution?
  • Should wine made from grapes grafted on American rootstocks be labeled as GMO?
Ok. They didn’t ask the last question in the 1800s, but there was a long-running and eventually meaningless debate about whether pre-Phylloxera wines were better.

An ironic modern rejection of a genetic save for grapes

Flash forward to modern times. There is a nematode pest which spreads a grape disease called Fanleaf Virus. Once the soil on a given site has been contaminated with that small, roundworm parasite and the virus, if you plant vines there, even after ten years with no grapes, after a few years the vines decline and die. This is actually a problem nearly as old as Phylloxera, but fortunately it does not spread easily. Once people understood how it works, it has been mainly limited to certain areas in France, some other European countries, and a few places in California. The sad part is that there are significant hectares of vineyard sites in premium wine growing districts that can’t be used to make great wine because of this issue. For many crops, one can just move away from such problems, but for wine the unique combination of climate and soil can create conditions which are legitimately important for quality. The term “Terroir” is used to describe that essence of place. Fanleaf virus and its vector severely compromise the Terroir wherever they occur.
With the advent of biotechnology there was the possibility of a better solution for Fanleaf contaminated sites that never existed before (there were some nematode resistant rootstocks but they were undesirable for other reasons). A rootstock was developed which was resistant to the virus using the same approach that saved the Hawaiian papaya industry. With that genetic solution, high quality grapes could be successfully grown on on compromised sites in a way directly analogous to how American grape rootstocks saved the crop from Phylloxera in the 1800s.
One might imagine that with the tremendous esteem for terroir in the wine French wine industry, this means of rehabilitating highly valued vineyard sites would be eagerly embraced by the wine industry. Unfortunately that was not the case. There were some modest field tests of this rootstock being conducted by a French governmental agency in 2010. There was a great deal of public controversy about this, little industry defense, and ultimately activists destroyed those trials on August 15, 2010. Their stated concern was that this new rootstock could “genetically contaminate” the rest of the grape crop. Let me explain why that fear was irrational to an absurd degree…
As this post describes, back in the late 1800s, the entire French and European grape crop was replanted on American rootstocks which differ from the Vitis vinifera grapes by probably hundreds of genes or versions of genes. No one has ever needed to worry about “genetic contamination” from those millions of acres of genetically “foreign” rootstocks even though they have been present for over 100 years. If those industry-saving American rootstocks (which are normally only underground) ever happened to get the chance to flower and generate pollen, it still wouldn’t matter because grapes are never grown from seed. They are always grown from cuttings or buds. That is also why you can plant blocks of different grape varieties side by side with no issue of “contamination”. So why would rootstocks with ONE very useful gene inserted by genetic engineering suddenly be a contamination risk? There was absolutely no risk.
As far as I can tell, the grape industries in France and elsewhere were sufficiently intimidated by the magnitude and ferocity of the irrational response to have decided to simply live with some of their best vineyard sites being compromised. If someone in those industries knows differently, please let me know.

Further reading

There are many websites which describe this traumatic event for the European grape industry and for the economy as a whole. Wikipedia: Great French Wine Blight is a review of what sounds like an interesting book about this by Christy Campbell. Wine Tidings republished by The Wampum Keeper is a nice summary from 1986.
Steve Savage is an agricultural scientist (plant pathology) with >30 years of experience in agricultural technology. He has worked for Colorado State University, DuPont (fungicide development), Mycogen (biocontrol development), and for the past 13 years as an independent. He also has a little vineyard in his back yard near San Diego. His website is Applied Mythology. You can follow him on Twitter @grapedoc

Virus-resistant transgenic papaya helps save Hawaiian industry

Virus-resistant transgenic papaya helps save Hawaiian industry
tion had dropped to only 26 million
pounds as PRSV spread throughout
the region. Since then, the transgenic
varieties have enabled farmers to
reclaim infected areas and in 2001,
Puna produced 40 million pounds of
papaya. The resistance has held up
remarkably well and remains stable
after 5 years of extensive plantings.
Hawaii also exports papaya to
Canada and Japan. The transgenic
papaya was recently deregulated in
Canada, which is a relatively small
market for Hawaii. The main chal
-
lenge is deregulation of transgenic
papaya in Japan, where Hawaii sells
about 30% of its papaya. Presently,
nontransgenic papaya must also be
produced in Hawaii to satisfy the
Japanese market, but this is increas
-
ingly difficult due to the disease
pressure. Exporters face added ex
-
penses to guard against the acciden
-
tal shipment of transgenic papaya
to Japan. In December 2000, Japan’s
Ministry of Agriculture, Forestry
and Fisheries approved line 55-1,
and the Ministry of Health, Labor
and Welfare is reviewing a recently
submitted petition for deregulation.
Anticipated approval of transgenic
papaya in Japan will allow Hawai
-
gated and established
in a field trial in
Waimanalo on Oahu
in April 1992. By De
-
cember 1992, it was
evident that line 55-1
was resistant under
field conditions.
From the 1992 field
trial, two cultivars
were developed and
designated ‘SunUp’
and ‘Rainbow’. ‘Sun
-
Up’ is homozygous
for the coat protein
gene while ‘Rainbow’
is an Fl hybrid of
‘SunUp’ and the non
-
transgenic ‘Kapoho’.
Unfortunately, by Oc
-
tober 1994, PRSV had spread through
-
out much of Puna, causing HDOA to
abandon rouging efforts to slow the
spread of PRSV. The race was on to
move the transgenic papaya line to
commercialization. A 1995 field trial in
Puna conclusively showed
that ‘SunUp’ and ‘Rainbow’
were resistant under pro
-
longed and heavy disease
pressure.
The U.S. Department of
Agriculture’s Animal Plant
Health Inspection Service
(APHIS) deregulated transgenic line
55-1 in November 1996, and the U.S. En
-
vironmental Protection Agency deregu
-
lated it in August 1997. The consultation
process with the U.S. Food and Drug
Administration was completed in Sep
-
tember 1997. Licenses to commercialize
the transgenic papaya were obtained by
the Papaya Administrative Committee
in Hawaii by April 1998. A celebration
was held to mark the debut of the trans
-
genic papaya on May 1, 6 years after
PRSV was discovered in Puna and after
the first field trial of line 55-1 was initi
-
ated. The transgenic fruit is currently
sold throughout the United States.
In 1992, Puna produced 53 million
pounds of papaya, but by 1998 produc
-
The experience in Hawaii shows
that transgenic virus resistance is
an excellent approach for controlling
viral diseases in horticultural crops.
92
CALIFORNIA AGRICULTURE, VOLUME
58
, NUMBER
2
Two varieties of papaya resistant to papaya ringspot virus
have been developed using biotechnology: SunUp,
left,
and Rainbow,
right.
They have performed well for Hawai
-
ian growers, even under prolonged and heavy disease
pressure.
Courtesy of R. Manshardt
http://CaliforniaAgriculture.ucop.edu
APRIL- JUNE
2004
93
ian growers to expand their transgen
-
ic papaya markets and will eliminate
excessive costs associated with segre
-
gating trans-genic and nontransgenic
fruits.
The experience in Hawaii shows
that transgenic virus resistance is an
excellent approach for controlling vi
-
ral diseases in horticultural crops. This
industry was fortunate to have a po
-
tential product already under devel
-
opment when PRSV was discovered in
the main growing area of Puna. There
are many reports that virus-resistant
transgenic plants are being developed
in diverse crops, but few have been
commercialized. The papaya story
shows that this approach can provide
a stable and safe option for virus pro
-
tection that can be essential for the
success of specific horticultural crops.
D. Gonsalves is Director, Pacific Basin
Agricultural Research Center, USDA-
ARS, Hilo, Hawaii.
Reference
Gonsalves D. 1998. Control of papaya
ringspot virus in papaya: A case study.
Annu Rev Phytopathol 36:415–37.
ies (see sidebar, page 96). The latter ap
-
proach avoids the task of transforming
many varieties of a particular tree crop
and in the future may be used to regu
-
late quality and productivity traits.
Nutrients, consumer qualities.
Al
-
though more difficult technically and
therefore not close to market, there
are many potential opportunities for
enhancing the nutritional value or con
-
sumer appeal of horticultural products
through biotechnology. In addition to
modification of ripening, projects to
increase the content of vitamins, miner
-
als or nutraceuticals in horticultural
products are in progress (Grusak and
Della Penna 1999). The development of
Golden Rice with enhanced beta
-
carotene (pro-vitamin A) in the grain (Ye
et al. 2000) demonstrated the potential
for biotechnology to increase nutritional
value. Whether such products will have
sufficient consumer appeal in fully de
-
veloped markets to drive their commer
-
cialization remains to be seen.
Floriculture, ornamental plants
Since floricultural and ornamental
plants are grown for aesthetic or other
nonedible purposes, there may be less
potential for public concern about GE
varieties than there has been with bio
-
tech food crops.
Flower color.
Several ornamental
plants, including carnation, rose and
gerbera, have been engineered for mod
-
ified flower color. Research has focused
on the manipulation of either anthocya
-
nins (red and blue colors) or carotenoids
(yellow and orange colors), with the in
-
tent of creating a wider range of flower
colors than occurs naturally, as well as
to produce natural dyes for industrial
purposes (Lu et al. 2003). Florigene is
selling Transgenic Moon
series carnations engineered for dark vi
-
olet-purple color around the world. The
varieties are developed in Australia and
flowers are produced primarily in South
America for marketing in the United
States and Japan.
Floral scent.
Putting the scent back
into flowers that have “lost” this trait
over years of traditional hybridization
and selection, or creating new fragrances
in plants, has considerable potential and
appeal. Research on genes controlling the
different biochemical pathways for vari
-
ous floral fragrances is being conducted
on wild plants and on crops such as snap
-
dragon, petunia and rose (Vainstein et al.
2001).
Plant size.
Currently, growth-
regulating chemicals are applied to
ornamental plants to inhibit gibberel
-
lic acid (GA) synthesis and reduce plant
height during crop production. Many
newly introduced ornamental species are
receiving particular attention via conven
-
tional breeding for dwarf plants because
their natural habits do not fit into market
-
ing systems requiring compact plants.
The manipulation of GA metabolism via
biotechnology has the potential to pro
-
duce ornamental and flowering plants
with reduced-height phenotypes (Clark et
al. 2003). The development of lawn grass
-
es that require significantly less frequent
mowing is another obvious application.
Early experiments suggest that expression
of genes controlling height can be applied
to many plant species.
Leaf life.
Engineering of plants to
delay leaf senescence (yellowing) is also
being pursued in ornamental crops. For
years, ornamental breeders have selected
new cultivars of plants with more attrac
-
tive “stay green” phenotypes. Cytokinins
are plant hormones well known to delay
the loss of chlorophyll in leaves; using
biotechnology, targeted expression of
genes involved in cytokinin synthesis is
now possible. When a gene promoting cy
-
tokinin biosynthesis is inserted into plants
in conjunction with a regulator (promot
-
er) that turns the gene on only when the
leaf starts to senesce, leaf life is extended
in transgenic plants exposed to drought,
nutrition and pathogen stress (Gan and
Amasino 1995; Clark et al. 2004).
Ethylene sensitivity
. As in fruit ripen
-
ing, manipulation of ethylene synthesis
or sensitivity has applications in the orna
-
mental plant industry. Ethylene accelerates
floral and foliar senescence, and chemical
methods have been developed to miti
-
Simply the diversity of crops utilized in horticulture slows
the adoption of new technologies. For example, as many
as 60 distinct cultivars of iceberg lettuce alone may be
grown throughout the year.
D. Gonsalves and S. Ferreira
Papaya ringspot virus causes small, darkened
rings on the surface of fruit, as well as foliar
damage.